- recipe bioconductor-epimutacions
Robust outlier identification for DNA methylation data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/epimutacions.html
- License:
MIT + file LICENSE
- Recipe:
The package includes some statistical outlier detection methods for epimutations detection in DNA methylation data. The methods included in the package are MANOVA, Multivariate linear models, isolation forest, robust mahalanobis distance, quantile and beta. The methods compare a case sample with a suspected disease against a reference panel (composed of healthy individuals) to identify epimutations in the given case sample. It also contains functions to annotate and visualize the identified epimutations.
- package bioconductor-epimutacions¶
-
- Versions:
1.2.0-1
,1.2.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biomart
>=2.54.0,<2.55.0
bioconductor-bumphunter
>=1.40.0,<1.41.0
bioconductor-ensembldb
>=2.22.0,<2.23.0
bioconductor-epimutacionsdata
>=1.2.0,<1.3.0
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-homo.sapiens
>=1.3.0,<1.4.0
bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
>=0.6.0,<0.7.0
bioconductor-illuminahumanmethylation450kmanifest
>=0.4.0,<0.5.0
bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19
>=0.6.0,<0.7.0
bioconductor-illuminahumanmethylationepicmanifest
>=0.3.0,<0.4.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-minfi
>=1.44.0,<1.45.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-txdb.hsapiens.ucsc.hg18.knowngene
>=3.2.0,<3.3.0
bioconductor-txdb.hsapiens.ucsc.hg19.knowngene
>=3.2.0,<3.3.0
bioconductor-txdb.hsapiens.ucsc.hg38.knowngene
>=3.16.0,<3.17.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-epimutacions
and update with:
conda update bioconductor-epimutacions
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-epimutacions:<tag>
(see bioconductor-epimutacions/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-epimutacions/README.html)