recipe bioconductor-epinem

epiNEM

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/epiNEM.html

License:

GPL-3

Recipe:

/bioconductor-epinem/meta.yaml

epiNEM is an extension of the original Nested Effects Models (NEM). EpiNEM is able to take into account double knockouts and infer more complex network signalling pathways. It is tailored towards large scale double knock-out screens.

package bioconductor-epinem

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.1-1,  1.14.1-0

Depends:

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-minet >=3.56.0,<3.57.0

• bioconductor-mnem >=1.14.0,<1.15.0

• r-base >=4.2,<4.3.0a0

• r-boolnet

• r-e1071

• r-gtools

• r-igraph

• r-latex2exp

• r-lattice

• r-latticeextra

• r-pcalg

• r-rcolorbrewer

Required By:

• bioconductor-nempi

• bioconductor-dce

• bioconductor-bnem

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-epinem

and update with:

conda update bioconductor-epinem

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-epinem:<tag>

(see bioconductor-epinem/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-epinem/README.html)