recipe bioconductor-epitxdb

Storing and accessing epitranscriptomic information using the AnnotationDbi interface

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/EpiTxDb.html

License:

Artistic-2.0

Recipe:

/bioconductor-epitxdb/meta.yaml

EpiTxDb facilitates the storage of epitranscriptomic information. More specifically, it can keep track of modification identity, position, the enzyme for introducing it on the RNA, a specifier which determines the position on the RNA to be modified and the literature references each modification is associated with.

package bioconductor-epitxdb

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-modstrings >=1.14.0,<1.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-trnadbimport >=1.16.0,<1.17.0

• r-base >=4.2,<4.3.0a0

• r-curl

• r-dbi

• r-httr

• r-rsqlite

• r-xml2

Required By:

• bioconductor-epitxdb.sc.saccer3

• bioconductor-epitxdb.mm.mm10

• bioconductor-epitxdb.hs.hg38

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-epitxdb

and update with:

conda update bioconductor-epitxdb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-epitxdb:<tag>

(see bioconductor-epitxdb/tags for valid values for <tag>)

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