recipe bioconductor-esetvis

Visualizations of expressionSet Bioconductor object

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/esetVis.html

License:

GPL-3

Recipe:

/bioconductor-esetvis/meta.yaml

Links:

biotools: esetvis, doi: 10.1038/nmeth.3252

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

package bioconductor-esetvis

Versions:

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0, 

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.3-0,  1.4.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-mlp >=1.46.0,<1.47.0

• r-base >=4.2,<4.3.0a0

• r-hexbin

• r-mass

• r-mpm

• r-rtsne

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-esetvis

and update with:

conda update bioconductor-esetvis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-esetvis:<tag>

(see bioconductor-esetvis/tags for valid values for <tag>)

Download stats

Link to this page

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