recipe bioconductor-esetvis

Visualizations of expressionSet Bioconductor object

Homepage

https://bioconductor.org/packages/3.14/bioc/html/esetVis.html

License

GPL-3

Recipe

/bioconductor-esetvis/meta.yaml

Links

biotools: esetvis, doi: 10.1038/nmeth.3252

Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.

package bioconductor-esetvis

Versions

1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.3-0, 

1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.3-0,  1.4.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-mlp >=1.42.0,<1.43.0

• r-base >=4.1,<4.2.0a0

• r-hexbin

• r-mass

• r-mpm

• r-rtsne

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-esetvis

and update with:

conda update bioconductor-esetvis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-esetvis:<tag>

(see bioconductor-esetvis/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-esetvis/README.html)