recipe bioconductor-eudysbiome

eudysbiome a package that permits to annotate the differential genera as harmful/harmless based on their ability to contribute to host diseases (as indicated in literature) or unknown based on their ambiguous genus classification. Further, the package statistically measures the eubiotic (harmless genera increase or harmful genera decrease) or dysbiotic(harmless genera decrease or harmful genera increase) impact of a given treatment or environmental change on the (gut-intestinal, GI) microbiome in comparison to the microbiome of the reference condition.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/eudysbiome.html

License

GPL-2

Recipe

/bioconductor-eudysbiome/meta.yaml

Links

biotools: eudysbiome, doi: 10.1186/s12918-016-0344-6

package bioconductor-eudysbiome

(downloads) docker_bioconductor-eudysbiome

Versions

1.12.0-1, 1.12.0-0, 1.10.0-0, 1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-eudysbiome

and update with:

conda update bioconductor-eudysbiome

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-eudysbiome:<tag>

(see bioconductor-eudysbiome/tags for valid values for <tag>)