- recipe bioconductor-eupathdb
Provides access to pathogen annotation resources available on EuPathDB databases
- Homepage:
https://bioconductor.org/packages/3.16/data/annotation/html/EuPathDB.html
- License:
Artistic-2.0
- Recipe:
Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework.
- package bioconductor-eupathdb¶
-
- Versions:
1.0.1-10
,1.0.1-9
,1.0.1-8
,1.0.1-7
,1.0.1-6
,1.0.1-5
,1.0.1-4
,1.0.1-3
,1.0.1-2
,1.0.1-10
,1.0.1-9
,1.0.1-8
,1.0.1-7
,1.0.1-6
,1.0.1-5
,1.0.1-4
,1.0.1-3
,1.0.1-2
,1.0.1-0
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-annotationhubdata
>=1.28.0,<1.29.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-data-packages
>=20221102
bioconductor-genomeinfodbdata
>=1.2.0,<1.3.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-eupathdb
and update with:
conda update bioconductor-eupathdb
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-eupathdb:<tag>
(see bioconductor-eupathdb/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-eupathdb/README.html)