recipe bioconductor-eupathdb

Provides access to pathogen annotation resources available on EuPathDB databases

Homepage

https://bioconductor.org/packages/3.14/data/annotation/html/EuPathDB.html

License

Artistic-2.0

Recipe

/bioconductor-eupathdb/meta.yaml

Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework.

package bioconductor-eupathdb

Versions

1.0.1-8,  1.0.1-7,  1.0.1-6,  1.0.1-5,  1.0.1-4,  1.0.1-3,  1.0.1-2,  1.0.1-0

Depends

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-annotationhubdata >=1.24.0,<1.25.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomeinfodbdata >=1.2.0,<1.3.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

• r-biocmanager

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-eupathdb

and update with:

conda update bioconductor-eupathdb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-eupathdb:<tag>

(see bioconductor-eupathdb/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-eupathdb/README.html)