recipe bioconductor-eupathdb

Provides access to pathogen annotation resources available on EuPathDB databases

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/EuPathDB.html

License:

Artistic-2.0

Recipe:

/bioconductor-eupathdb/meta.yaml

Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework.

package bioconductor-eupathdb

Versions:

1.0.1-10,  1.0.1-9,  1.0.1-8,  1.0.1-7,  1.0.1-6,  1.0.1-5,  1.0.1-4,  1.0.1-3,  1.0.1-2, 

1.0.1-10,  1.0.1-9,  1.0.1-8,  1.0.1-7,  1.0.1-6,  1.0.1-5,  1.0.1-4,  1.0.1-3,  1.0.1-2,  1.0.1-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-annotationhubdata >=1.28.0,<1.29.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-data-packages >=20221102

• bioconductor-genomeinfodbdata >=1.2.0,<1.3.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• curl

• r-base >=4.2,<4.3.0a0

• r-biocmanager

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-eupathdb

and update with:

conda update bioconductor-eupathdb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-eupathdb:<tag>

(see bioconductor-eupathdb/tags for valid values for <tag>)

Download stats

Link to this page

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