recipe bioconductor-eupathdb

Provides access to pathogen annotation resources available on EuPathDB databases

Homepage

https://bioconductor.org/packages/3.10/data/annotation/html/EuPathDB.html

License

Artistic-2.0

Recipe

/bioconductor-eupathdb/meta.yaml

Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework.

package bioconductor-eupathdb

Versions

1.0.1-3, 1.0.1-2, 1.0.1-0

Depends

• bioconductor-annotationhub >=2.18.0,<2.19.0

• bioconductor-annotationhubdata >=1.16.0,<1.17.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-genomeinfodbdata >=1.2.0,<1.3.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• curl >=7.65.3,<8.0a0

• r-base >=3.6,<3.7.0a0

• r-biocmanager

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-eupathdb

and update with:

conda update bioconductor-eupathdb

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-eupathdb:<tag>

(see bioconductor-eupathdb/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-eupathdb/README.html)