- recipe bioconductor-eupathdb
Provides access to pathogen annotation resources available on EuPathDB databases
- Homepage
https://bioconductor.org/packages/3.14/data/annotation/html/EuPathDB.html
- License
Artistic-2.0
- Recipe
Brings together annotation resources from the various EuPathDB databases (PlasmoDB, ToxoDB, TriTrypDB, etc.) and makes them available in R using the AnnotationHub framework.
- package bioconductor-eupathdb¶
-
- Versions
1.0.1-8
,1.0.1-7
,1.0.1-6
,1.0.1-5
,1.0.1-4
,1.0.1-3
,1.0.1-2
,1.0.1-0
- Depends
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-annotationhubdata
>=1.24.0,<1.25.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodbdata
>=1.2.0,<1.3.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-eupathdb
and update with:
conda update bioconductor-eupathdb
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-eupathdb:<tag>
(see bioconductor-eupathdb/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-eupathdb/README.html)