recipe bioconductor-eventpointer

An effective identification of alternative splicing events using junction arrays and RNA-Seq data






EventPointer is an R package to identify alternative splicing events that involve either simple (case-control experiment) or complex experimental designs such as time course experiments and studies including paired-samples. The algorithm can be used to analyze data from either junction arrays (Affymetrix Arrays) or sequencing data (RNA-Seq). The software returns a data.frame with the detected alternative splicing events: gene name, type of event (cassette, alternative 3',…,etc), genomic position, statistical significance and increment of the percent spliced in (Delta PSI) for all the events. The algorithm can generate a series of files to visualize the detected alternative splicing events in IGV. This eases the interpretation of results and the design of primers for standard PCR validation.

package bioconductor-eventpointer

(downloads) docker_bioconductor-eventpointer



Required By:


With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-eventpointer

and update with:

conda update bioconductor-eventpointer

or use the docker container:

docker pull<tag>

(see bioconductor-eventpointer/tags for valid values for <tag>)

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