recipe bioconductor-ewcedata

The ewceData package provides reference data required for ewce

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/ewceData.html

License:

Artistic-2.0

Recipe:

/bioconductor-ewcedata/meta.yaml

This package provides reference data required for ewce. Expression Weighted Celltype Enrichment (EWCE) is used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

package bioconductor-ewcedata

Versions:

1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221109

• bioconductor-experimenthub >=2.6.0,<2.7.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-ewce

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ewcedata

and update with:

conda update bioconductor-ewcedata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ewcedata:<tag>

(see bioconductor-ewcedata/tags for valid values for <tag>)

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Link to this page

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