- recipe bioconductor-eximir
R functions for the normalization of Exiqon miRNA array data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ExiMiR.html
- License:
GPL-2
- Recipe:
- Links:
biotools: eximir, doi: 10.1186/1756-0500-7-302
This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.
- package bioconductor-eximir¶
-
- Versions:
2.40.0-0
,2.36.0-0
,2.34.0-0
,2.32.0-1
,2.32.0-0
,2.30.0-0
,2.28.0-0
,2.26.0-1
,2.24.0-0
,2.40.0-0
,2.36.0-0
,2.34.0-0
,2.32.0-1
,2.32.0-0
,2.30.0-0
,2.28.0-0
,2.26.0-1
,2.24.0-0
,2.22.0-0
,2.20.0-0
- Depends:
bioconductor-affy
>=1.76.0,<1.77.0
bioconductor-affyio
>=1.68.0,<1.69.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-eximir
and update with:
conda update bioconductor-eximir
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-eximir:<tag>
(see bioconductor-eximir/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-eximir/README.html)