-
recipe
bioconductor-eximir¶ R functions for the normalization of Exiqon miRNA array data
- Homepage
https://bioconductor.org/packages/3.11/bioc/html/ExiMiR.html
- License
GPL-2
- Recipe
- Links
biotools: eximir, doi: 10.1186/1756-0500-7-302
This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.
-
package
bioconductor-eximir¶ 
- Versions
2.30.0-0, 2.28.0-0, 2.26.0-1, 2.24.0-0, 2.22.0-0, 2.20.0-0
- Depends
bioconductor-affy >=1.66.0,<1.67.0
bioconductor-affyio >=1.58.0,<1.59.0
bioconductor-biobase >=2.48.0,<2.49.0
bioconductor-limma >=3.44.0,<3.45.0
bioconductor-preprocesscore >=1.50.0,<1.51.0
r-base >=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-eximir
and update with:
conda update bioconductor-eximir
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-eximir:<tag>
(see bioconductor-eximir/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-eximir/README.html)