recipe bioconductor-eximir

R functions for the normalization of Exiqon miRNA array data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/ExiMiR.html

License

GPL-2

Recipe

/bioconductor-eximir/meta.yaml

Links

biotools: eximir, doi: 10.1186/1756-0500-7-302

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

package bioconductor-eximir

Versions

2.34.0-0,  2.32.0-1,  2.32.0-0,  2.30.0-0,  2.28.0-0,  2.26.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-0

Depends

• bioconductor-affy >=1.70.0,<1.71.0

• bioconductor-affyio >=1.62.0,<1.63.0

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-limma >=3.48.0,<3.49.0

• bioconductor-preprocesscore >=1.54.0,<1.55.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-eximir

and update with:

conda update bioconductor-eximir

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-eximir:<tag>

(see bioconductor-eximir/tags for valid values for <tag>)

Download stats

Link to this page

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