recipe bioconductor-eximir

R functions for the normalization of Exiqon miRNA array data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ExiMiR.html

License:

GPL-2

Recipe:

/bioconductor-eximir/meta.yaml

Links:

biotools: eximir, doi: 10.1186/1756-0500-7-302

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

package bioconductor-eximir

Versions:

2.40.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-1,  2.32.0-0,  2.30.0-0,  2.28.0-0,  2.26.0-1,  2.24.0-0, 

2.40.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-1,  2.32.0-0,  2.30.0-0,  2.28.0-0,  2.26.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-0

Depends:

• bioconductor-affy >=1.76.0,<1.77.0

• bioconductor-affyio >=1.68.0,<1.69.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-eximir

and update with:

conda update bioconductor-eximir

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-eximir:<tag>

(see bioconductor-eximir/tags for valid values for <tag>)

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