recipe bioconductor-experimenthub

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/ExperimentHub.html License:Artistic-2.0 Recipe:/bioconductor-experimenthub/meta.yaml

package bioconductor-experimenthub

Versions:

1.8.0-0, 1.6.1-0, 1.4.0-0

Depends:

• bioconductor-annotationhub >=2.14.0,<2.15.0
• bioconductor-biocgenerics >=0.28.0,<0.29.0
• bioconductor-s4vectors >=0.20.0,<0.21.0
• r-base >=3.5.1,<3.5.2.0a0
• r-biocmanager
• r-curl

Required By:

• bioconductor-mcsurvdata
• bioconductor-duoclustering2018
• bioconductor-cllmethylation
• bioconductor-flowsorted.blood.epic
• bioconductor-brainimager
• bioconductor-brainimagerdata
• bioconductor-harmonizedtcgadata
• bioconductor-tabulamurisdata
• bioconductor-experimenthubdata
• bioconductor-copyneutralima
• bioconductor-sesamedata
• bioconductor-tenxbraindata
• bioconductor-gseabenchmarker
• bioconductor-seqsqc
• bioconductor-hmp16sdata
• bioconductor-alpinedata
• bioconductor-tenxpbmcdata
• bioconductor-metagxovarian
• bioconductor-metagxpancreas
• bioconductor-curatedtcgadata
• bioconductor-metagxbreast
• bioconductor-allenpvc
• bioconductor-humanaffydata
• bioconductor-hdcytodata
• bioconductor-restfulse
• bioconductor-curatedmetagenomicdata
• bioconductor-restfulsedata
• bioconductor-tcgawgbsdata.hg19
• bioconductor-cellmapperdata

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-experimenthub

and update with:

conda update bioconductor-experimenthub

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-experimenthub:<tag>

(see bioconductor-experimenthub/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-experimenthub/README.html)