recipe bioconductor-experimenthub

Client to access ExperimentHub resources

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/ExperimentHub.html

License:

Artistic-2.0

Recipe:

/bioconductor-experimenthub/meta.yaml

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

package bioconductor-experimenthub

Versions:

2.2.0-0,  2.0.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.1-0, 

2.2.0-0,  2.0.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.1-0,  1.4.0-0

Depends:

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-biocmanager

• r-curl

• r-rappdirs

Required By:

• bioconductor-ewcedata

• bioconductor-celldex

• bioconductor-m6aboost

• bioconductor-tuberculosis

• bioconductor-mcsurvdata

• bioconductor-spatiallibd

• bioconductor-hmp16sdata

• bioconductor-metagxovarian

• bioconductor-benchmarkfdrdata2019

• bioconductor-adductdata

• bioconductor-pwrewas.data

• bioconductor-tabulamurissenisdata

• bioconductor-microbiomedatasets

• bioconductor-beadsorted.saliva.epic

• bioconductor-obmiti

• bioconductor-flowsorted.cordbloodcombined.450k

• bioconductor-mousethymusageing

• bioconductor-signaturesearch

• bioconductor-methylseqdata

• bioconductor-duoclustering2018

• bioconductor-highlyreplicatedrnaseq

• bioconductor-dmrcate

• bioconductor-experimenthubdata

• bioconductor-seqsqc

• bioconductor-tcgawgbsdata.hg19

• bioconductor-nullrangesdata

• bioconductor-ewce

• bioconductor-lrcell

• bioconductor-muscdata

• bioconductor-easierdata

• bioconductor-flowsorted.blood.epic

• bioconductor-metagxbreast

• bioconductor-curatedmetagenomicdata

• bioconductor-gseabenchmarker

• bioconductor-curatedtbdata

• bioconductor-copyneutralima

• bioconductor-biscuiteerdata

• bioconductor-scatedata

• bioconductor-bodymaprat

• bioconductor-harmonizedtcgadata

• bioconductor-tabulamurisdata

• bioconductor-tenxbraindata

• bioconductor-hcadata

• bioconductor-bioimagedbs

• bioconductor-macsr

• bioconductor-tenxpbmcdata

• bioconductor-tenxvisiumdata

• bioconductor-methylclockdata

• bioconductor-alpinedata

• bioconductor-spatialdmelxsim

• bioconductor-singlemoleculefootprintingdata

• bioconductor-tartare

• bioconductor-depmap

• bioconductor-stexampledata

• bioconductor-precisetadhub

• bioconductor-mousegastrulationdata

• bioconductor-sesamedata

• bioconductor-dmrcatedata

• bioconductor-scrnaseq

• bioconductor-emtdata

• bioconductor-restfulsedata

• bioconductor-restfulse

• bioconductor-metagxpancreas

• bioconductor-hdcytodata

• bioconductor-methylclock

• bioconductor-curatedtcgadata

• bioconductor-singlecelltk

• bioconductor-bloodgen3module

• bioconductor-fieldeffectcrc

• bioconductor-brainimagerdata

• bioconductor-scpdata

• bioconductor-tenxbusdata

• bioconductor-genomicdistributionsdata

• bioconductor-hmp2data

• bioconductor-simbenchdata

• bioconductor-phyloprofile

• bioconductor-enmix

• bioconductor-rlhub

• bioconductor-cllmethylation

• bioconductor-imcdatasets

• bioconductor-singlecellmultimodal

• bioconductor-cellmapperdata

• bioconductor-droplettestfiles

• bioconductor-msigdb

• bioconductor-signaturesearchdata

• bioconductor-lrcelltypemarkers

• bioconductor-phyloprofiledata

• bioconductor-chipseqdbdata

• bioconductor-adductomicsr

• bioconductor-humanaffydata

• bioconductor-nanoporernaseq

• bioconductor-curatedadipochip

• bioconductor-nestlink

• bioconductor-clustifyrdatahub

• bioconductor-nxtirfdata

• bioconductor-rnamodr.data

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-experimenthub

and update with:

conda update bioconductor-experimenthub

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-experimenthub:<tag>

(see bioconductor-experimenthub/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-experimenthub/README.html)