recipe bioconductor-experimenthub

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ExperimentHub.html

License

Artistic-2.0

Recipe

/bioconductor-experimenthub/meta.yaml

package bioconductor-experimenthub

Versions

1.8.0-0, 1.6.1-0, 1.4.0-0

Depends

• bioconductor-annotationhub >=2.14.0,<2.15.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-biocmanager

• r-curl

Required By

• bioconductor-experimenthubdata

• bioconductor-cellmapperdata

• bioconductor-metagxovarian

• bioconductor-restfulse

• bioconductor-metagxpancreas

• bioconductor-harmonizedtcgadata

• bioconductor-restfulsedata

• bioconductor-metagxbreast

• bioconductor-mcsurvdata

• bioconductor-tabulamurisdata

• bioconductor-seqsqc

• bioconductor-sesamedata

• bioconductor-cllmethylation

• bioconductor-alpinedata

• bioconductor-tenxpbmcdata

• bioconductor-hmp16sdata

• bioconductor-brainimagerdata

• bioconductor-curatedmetagenomicdata

• bioconductor-tcgawgbsdata.hg19

• bioconductor-hdcytodata

• bioconductor-curatedtcgadata

• bioconductor-allenpvc

• bioconductor-gseabenchmarker

• bioconductor-brainimager

• bioconductor-duoclustering2018

• bioconductor-tenxbraindata

• bioconductor-humanaffydata

• bioconductor-flowsorted.blood.epic

• bioconductor-copyneutralima

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-experimenthub

and update with:

conda update bioconductor-experimenthub

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-experimenthub:<tag>

(see bioconductor-experimenthub/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-experimenthub/README.html)