recipe bioconductor-famat

Functional analysis of metabolic and transcriptomic data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/famat.html

License

GPL-3

Recipe

/bioconductor-famat/meta.yaml

Famat is made to collect data about lists of genes and metabolites provided by user, and to visualize it through a Shiny app. Information collected is: - Pathways containing some of the user's genes and metabolites (obtained using a pathway enrichment analysis). - Direct interactions between user's elements inside pathways. - Information about elements (their identifiers and descriptions). - Go terms enrichment analysis performed on user's genes. The Shiny app is composed of: - information about genes, metabolites, and direct interactions between them inside pathways. - an heatmap showing which elements from the list are in pathways (pathways are structured in hierarchies). - hierarchies of enriched go terms using Molecular Function and Biological Process.

package bioconductor-famat

(downloads) docker_bioconductor-famat

Versions

1.1.1-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-famat

and update with:

conda update bioconductor-famat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-famat:<tag>

(see bioconductor-famat/tags for valid values for <tag>)

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