recipe bioconductor-fdb.fantom4.promoters.hg19

Annotation package for FANTOM4 promoters identified from THP-1 cells

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/FDb.FANTOM4.promoters.hg19.html

License:

Artistic-2.0

Recipe:

/bioconductor-fdb.fantom4.promoters.hg19/meta.yaml

FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified

package bioconductor-fdb.fantom4.promoters.hg19

Versions:

1.0.0-10,  1.0.0-9,  1.0.0-8,  1.0.0-7,  1.0.0-6,  1.0.0-5,  1.0.0-4,  1.0.0-3,  1.0.0-2, 

1.0.0-10,  1.0.0-9,  1.0.0-8,  1.0.0-7,  1.0.0-6,  1.0.0-5,  1.0.0-4,  1.0.0-3,  1.0.0-2,  1.0.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-data-packages >=20221102

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fdb.fantom4.promoters.hg19

and update with:

conda update bioconductor-fdb.fantom4.promoters.hg19

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fdb.fantom4.promoters.hg19:<tag>

(see bioconductor-fdb.fantom4.promoters.hg19/tags for valid values for <tag>)

Download stats

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