recipe bioconductor-fdrame

FDR adjustments of Microarray Experiments (FDR-AME)



GPL (>= 2)



This package contains two main functions. The first is which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access

package bioconductor-fdrame

(downloads) docker_bioconductor-fdrame



depends libblas:


depends libgcc-ng:


depends liblapack:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-fdrame

and update with::

   mamba update bioconductor-fdrame

To create a new environment, run:

mamba create --name myenvname bioconductor-fdrame

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-fdrame/tags`_ for valid values for ``<tag>``)

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