recipe bioconductor-filterffpe

FFPE Artificial Chimeric Read Filter for NGS data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/FilterFFPE.html

License

LGPL-3

Recipe

/bioconductor-filterffpe/meta.yaml

This package finds and filters artificial chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed paraffin-embedded (FFPE) tissues. These artificial chimeric reads can lead to a large number of false positive structural variation (SV) calls. The required input is an indexed BAM file of a FFPE sample.

package bioconductor-filterffpe

(downloads) docker_bioconductor-filterffpe

Versions

1.4.0-01.2.0-01.0.0-21.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-filterffpe

and update with:

conda update bioconductor-filterffpe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-filterffpe:<tag>

(see bioconductor-filterffpe/tags for valid values for <tag>)

Download stats