recipe bioconductor-fithic

Confidence estimation for intra-chromosomal contact maps



GPL (>= 2)




biotools: fithic, doi: 10.1101/gr.160374

Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

package bioconductor-fithic

(downloads) docker_bioconductor-fithic



depends libblas:


depends libgcc-ng:


depends liblapack:


depends libstdcxx-ng:


depends r-base:


depends r-data.table:

depends r-fdrtool:

depends r-rcpp:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-fithic

and update with::

   mamba update bioconductor-fithic

To create a new environment, run:

mamba create --name myenvname bioconductor-fithic

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-fithic/tags`_ for valid values for ``<tag>``)

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