recipe bioconductor-fletcher2013a

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Homepage

https://bioconductor.org/packages/3.12/data/experiment/html/Fletcher2013a.html

License

GPL (>= 2)

Recipe

/bioconductor-fletcher2013a/meta.yaml

The package Fletcher2013a contains time-course gene expression data from MCF-7 cells treated under different experimental systems in order to perturb FGFR2 signalling. The data comes from Fletcher et al. (Nature Comms 4:2464, 2013) where further details about the background and the experimental design of the study can be found.

package bioconductor-fletcher2013a

Versions

1.26.0-0,  1.25.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-limma >=3.46.0,<3.47.0

• curl >=7.71.1,<8.0a0

• r-base >=4.0,<4.1.0a0

• r-gplots

• r-venndiagram

Required By

• bioconductor-fletcher2013b

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fletcher2013a

and update with:

conda update bioconductor-fletcher2013a

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fletcher2013a:<tag>

(see bioconductor-fletcher2013a/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fletcher2013a/README.html)