recipe bioconductor-fletcher2013a

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/Fletcher2013a.html

License:

GPL (>= 2)

Recipe:

/bioconductor-fletcher2013a/meta.yaml

The package Fletcher2013a contains time-course gene expression data from MCF-7 cells treated under different experimental systems in order to perturb FGFR2 signalling. The data comes from Fletcher et al. (Nature Comms 4:2464, 2013) where further details about the background and the experimental design of the study can be found.

package bioconductor-fletcher2013a

Versions:

1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.25.0-0,  1.24.0-0,  1.22.0-0, 

1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.25.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-data-packages >=20221104

• bioconductor-limma >=3.54.0,<3.55.0

• curl

• r-base >=4.2,<4.3.0a0

• r-gplots

• r-venndiagram

Required By:

• bioconductor-fletcher2013b

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-fletcher2013a

and update with:

conda update bioconductor-fletcher2013a

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fletcher2013a:<tag>

(see bioconductor-fletcher2013a/tags for valid values for <tag>)

Download stats

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