recipe bioconductor-fletcher2013a

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/Fletcher2013a.html

License:

GPL (>= 2)

Recipe:

/bioconductor-fletcher2013a/meta.yaml

The package Fletcher2013a contains time-course gene expression data from MCF-7 cells treated under different experimental systems in order to perturb FGFR2 signalling. The data comes from Fletcher et al. (Nature Comms 4:2464, 2013) where further details about the background and the experimental design of the study can be found.

package bioconductor-fletcher2013a

(downloads) docker_bioconductor-fletcher2013a

versions:
1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0, 

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.25.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

depends bioconductor-biobase:

>=2.66.0,<2.67.0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-limma:

>=3.62.0,<3.63.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

depends r-gplots:

depends r-venndiagram:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-fletcher2013a

and update with::

   mamba update bioconductor-fletcher2013a

To create a new environment, run:

mamba create --name myenvname bioconductor-fletcher2013a

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-fletcher2013a:<tag>

(see `bioconductor-fletcher2013a/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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