recipe bioconductor-flowcore

flowCore: Basic structures for flow cytometry data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/flowCore.html

License

Artistic-2.0

Recipe

/bioconductor-flowcore/meta.yaml

Links

biotools: flowcore, doi: 10.1186/1471-2105-10-106

Provides S4 data structures and basic functions to deal with flow cytometry data.

package bioconductor-flowcore

Versions

2.2.0-1,  2.2.0-0,  2.0.0-0,  1.52.0-0,  1.50.0-1,  1.48.1-0,  1.48.0-0,  1.46.2-0,  1.44.0-0, 

2.2.0-1,  2.2.0-0,  2.0.0-0,  1.52.0-0,  1.50.0-1,  1.48.1-0,  1.48.0-0,  1.46.2-0,  1.44.0-0,  1.42.3-0,  1.42.0-0,  1.38.2-1,  1.38.2-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-cytolib >=2.2.0,<2.3.0

• bioconductor-rprotobuflib >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=7.5.0

• r-base >=4.0,<4.1.0a0

• r-bh >=1.65.0.1

• r-matrixstats

• r-rcpp

• r-rcpparmadillo

Required By

• bioconductor-flowbeads

• ig-checkflowtypes

• bioconductor-ddpcrclust

• bioconductor-flowdensity

• bioconductor-onesense

• bioconductor-cytofast

• bioconductor-sconify

• bioconductor-flowfp

• bioconductor-flowutils

• bioconductor-flowchic

• bioconductor-flowclean

• bioconductor-cytoml

• bioconductor-flowclust

• bioconductor-hdcytodata

• bioconductor-ncdfflow

• bioconductor-ggcyto

• bioconductor-metacyto

• bioconductor-flowai

• bioconductor-catalyst

• bioconductor-cytotree

• bioconductor-infinityflow

• bioconductor-flowspecs

• ig-flowtools

• bioconductor-flowtrans

• bioconductor-flowmatch

• bioconductor-flowmerge

• bioconductor-flowmeans

• bioconductor-flowstats

• bioconductor-gatefinder

• bioconductor-flowworkspace

• bioconductor-diffcyt

• bioconductor-flowspy

• bioconductor-flowsom

• bioconductor-immunespacer

• bioconductor-flowviz

• bioconductor-flowcut

• bioconductor-flowtime

• ig-checkfcs

• bioconductor-flowbin

• bioconductor-peacoqc

• bioconductor-opencyto

• bioconductor-flowploidy

• bioconductor-confess

• bioconductor-cydar

• bioconductor-immunoclust

• bioconductor-flowfitexampledata

• bioconductor-healthyflowdata

• bioconductor-scdataviz

• bioconductor-cytodx

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flowcore

and update with:

conda update bioconductor-flowcore

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flowcore:<tag>

(see bioconductor-flowcore/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-flowcore/README.html)