recipe bioconductor-flowmap

flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/flowMap.html

License

GPL (>=2)

Recipe

/bioconductor-flowmap/meta.yaml

Links

biotools: flowmap, doi: 10.1002/cyto.a.22735

package bioconductor-flowmap

(downloads) docker_bioconductor-flowmap

Versions

1.22.0-0, 1.20.1-0, 1.18.0-0, 1.14.0-0

Depends r-abind

>=1.4.0

Depends r-ade4

>=1.5-2

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-doparallel

>=1.0.3

Depends r-matrix

>=1.1-4

Depends r-reshape2

>=1.2.2

Depends r-scales

>=0.2.3

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flowmap

and update with:

conda update bioconductor-flowmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flowmap:<tag>

(see bioconductor-flowmap/tags for valid values for <tag>)