recipe bioconductor-flowsorted.blood.epic

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/FlowSorted.Blood.EPIC.html

License:

GPL-3

Recipe:

/bioconductor-flowsorted.blood.epic/meta.yaml

Raw data objects to be used for blood cell proportion estimation in minfi and similar packages. The FlowSorted.Blood.EPIC object is based in samples assayed by Brock Christensen and colleagues; for details see Salas et al. 2018. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.

package bioconductor-flowsorted.blood.epic

Versions:

2.2.0-0,  1.12.1-1,  1.12.1-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.1-0,  1.4.0-0,  1.2.0-1, 

2.2.0-0,  1.12.1-1,  1.12.1-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.1-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-data-packages >=20221110

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-genefilter >=1.80.0,<1.81.0

• bioconductor-minfi >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

• r-nlme

• r-quadprog

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-flowsorted.blood.epic

and update with:

conda update bioconductor-flowsorted.blood.epic

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flowsorted.blood.epic:<tag>

(see bioconductor-flowsorted.blood.epic/tags for valid values for <tag>)

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