- recipe bioconductor-flowspecs
Tools for processing of high-dimensional cytometry data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/flowSpecs.html
- License
MIT + file LICENSE
- Recipe
This package is intended to fill the role of conventional cytometry pre-processing software, for spectral decomposition, transformation, visualization and cleanup, and to aid further downstream analyses, such as with DepecheR, by enabling transformation of flowFrames and flowSets to dataframes. Functions for flowCore-compliant automatic 1D-gating/filtering are in the pipe line. The package name has been chosen both as it will deal with spectral cytometry and as it will hopefully give the user a nice pair of spectacles through which to view their data.
- package bioconductor-flowspecs¶
-
- Versions
1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-flowcore
>=2.6.0,<2.7.0
r-base
>=4.1,<4.2.0a0
r-ggplot2
>=3.1.0
r-reshape2
>=1.4.3
r-zoo
>=1.8.6
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-flowspecs
and update with:
conda update bioconductor-flowspecs
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-flowspecs:<tag>
(see bioconductor-flowspecs/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-flowspecs/README.html)