recipe bioconductor-flowspecs

Tools for processing of high-dimensional cytometry data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/flowSpecs.html

License

MIT + file LICENSE

Recipe

/bioconductor-flowspecs/meta.yaml

This package is intended to fill the role of conventional cytometry pre-processing software, for spectral decomposition, transformation, visualization and cleanup, and to aid further downstream analyses, such as with DepecheR, by enabling transformation of flowFrames and flowSets to dataframes. Functions for flowCore-compliant automatic 1D-gating/filtering are in the pipe line. The package name has been chosen both as it will deal with spectral cytometry and as it will hopefully give the user a nice pair of spectacles through which to view their data.

package bioconductor-flowspecs

Versions

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-flowcore >=2.6.0,<2.7.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2 >=3.1.0

• r-reshape2 >=1.4.3

• r-zoo >=1.8.6

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-flowspecs

and update with:

conda update bioconductor-flowspecs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-flowspecs:<tag>

(see bioconductor-flowspecs/tags for valid values for <tag>)

Download stats

Link to this page

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