recipe bioconductor-flowvs

Variance stabilization in flow cytometry (and microarrays)

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/flowVS.html

License:

Artistic-2.0

Recipe:

/bioconductor-flowvs/meta.yaml

Per-channel variance stabilization from a collection of flow cytometry samples by Bertlett test for homogeneity of variances. The approach is applicable to microarrays data as well.

package bioconductor-flowvs

versions:

1.34.0-0,  1.32.0-0,  1.30.0-0,  1.26.0-0,  1.24.0-0,  1.19.0-0,  1.18.0-0,  1.16.0-1,  1.14.1-0

depends bioconductor-flowcore:

>=2.14.0,<2.15.0

depends bioconductor-flowstats:

>=4.14.0,<4.15.0

depends bioconductor-flowviz:

>=1.66.0,<1.67.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-flowvs

and update with::

   mamba update bioconductor-flowvs

To create a new environment, run:

mamba create --name myenvname bioconductor-flowvs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-flowvs:<tag>

(see `bioconductor-flowvs/tags`_ for valid values for ``<tag>``)

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Link to this page

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