recipe bioconductor-flowworkspacedata

A data package containing two flowJo, one diva xml workspace and the associated fcs files as well as three GatingSets for testing the flowWorkspace, openCyto and CytoML packages.






The necessary external data to run the flowWorkspace and openCyto vignette is found in this package.

package bioconductor-flowworkspacedata

(downloads) docker_bioconductor-flowworkspacedata



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-flowworkspacedata

and update with::

   mamba update bioconductor-flowworkspacedata

To create a new environment, run:

mamba create --name myenvname bioconductor-flowworkspacedata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-flowworkspacedata/tags`_ for valid values for ``<tag>``)

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