recipe bioconductor-fobitools

Tools For Manipulating FOBI Ontology

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/fobitools.html

License:

GPL-3

Recipe:

/bioconductor-fobitools/meta.yaml

A set of tools for interacting with Food-Biomarker Ontology (FOBI). A collection of basic manipulation tools for biological significance analysis, graphs, and text mining strategies for annotating nutritional data.

package bioconductor-fobitools

(downloads) docker_bioconductor-fobitools

versions:

1.10.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-fgsea:

>=1.28.0,<1.29.0

depends r-base:

>=4.3,<4.4.0a0

depends r-clisymbols:

depends r-crayon:

depends r-dplyr:

depends r-ggplot2:

depends r-ggraph:

depends r-magrittr:

depends r-ontologyindex:

depends r-purrr:

depends r-recordlinkage:

depends r-stringr:

depends r-textclean:

depends r-tictoc:

depends r-tidygraph:

depends r-tidyr:

depends r-vroom:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-fobitools

and update with::

   mamba update bioconductor-fobitools

To create a new environment, run:

mamba create --name myenvname bioconductor-fobitools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-fobitools:<tag>

(see `bioconductor-fobitools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-fobitools/README.html)