-
recipe
bioconductor-fraser
Find RAre Splicing Events in RNA-Seq Data
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/FRASER.html
- License
MIT + file LICENSE
- Recipe
Detection of rare aberrant splicing events in transcriptome profiles. The workflow aims to assist the diagnostics in the field of rare diseases where RNA-seq is performed to identify aberrant splicing defects.
-
package
bioconductor-fraser
¶ -
- Versions
1.2.0-0
,1.0.1-0
,1.0.0-0
- Depends
bioconductor-annotationdbi
>=1.52.0,<1.53.0
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-biomart
>=2.46.0,<2.47.0
bioconductor-bsgenome
>=1.58.0,<1.59.0
bioconductor-delayedarray
>=0.16.0,<0.17.0
bioconductor-delayedmatrixstats
>=1.12.0,<1.13.0
bioconductor-genomeinfodb
>=1.26.0,<1.27.0
bioconductor-genomicalignments
>=1.26.0,<1.27.0
bioconductor-genomicfeatures
>=1.42.0,<1.43.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-hdf5array
>=1.18.0,<1.19.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-outrider
>=1.8.0,<1.9.0
bioconductor-pcamethods
>=1.82.0,<1.83.0
bioconductor-rhdf5
>=2.34.0,<2.35.0
bioconductor-rsamtools
>=2.6.0,<2.7.0
bioconductor-rsubread
>=2.4.0,<2.5.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-fraser
and update with:
conda update bioconductor-fraser
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-fraser:<tag>
(see bioconductor-fraser/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-fraser/README.html)