- recipe bioconductor-fraser
Find RAre Splicing Events in RNA-Seq Data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/FRASER.html
- License
MIT + file LICENSE
- Recipe
- Links
Detection of rare aberrant splicing events in transcriptome profiles. The workflow aims to assist the diagnostics in the field of rare diseases where RNA-seq is performed to identify aberrant splicing defects.
- package bioconductor-fraser¶
-
- Versions
1.6.1-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.1-1
,1.2.1-0
,1.2.0-0
,1.0.1-0
,1.0.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-delayedmatrixstats
>=1.16.0,<1.17.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-outrider
>=1.12.0,<1.13.0
bioconductor-pcamethods
>=1.86.0,<1.87.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rsubread
>=2.8.0,<2.9.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-fraser
and update with:
conda update bioconductor-fraser
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-fraser:<tag>
(see bioconductor-fraser/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-fraser/README.html)