recipe bioconductor-gagedata

This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/gageData.html

License

GPL (>=2.0)

Recipe

/bioconductor-gagedata/meta.yaml

package bioconductor-gagedata

(downloads) docker_bioconductor-gagedata

Versions

2.22.0-0, 2.20.0-0, 2.18.0-0, 2.16.0-1, 2.16.0-0, 2.14.0-0, 2.10.0-0, 2.8.0-0

Depends curl

>=7.64.1,<8.0a0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gagedata

and update with:

conda update bioconductor-gagedata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gagedata:<tag>

(see bioconductor-gagedata/tags for valid values for <tag>)