recipe bioconductor-gaggle

Broadcast data between R and Gaggle



GPL version 2 or newer



This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

package bioconductor-gaggle

(downloads) docker_bioconductor-gaggle



depends bioconductor-graph:


depends r-base:


depends r-rjava:


depends r-runit:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gaggle

and update with::

   mamba update bioconductor-gaggle

To create a new environment, run:

mamba create --name myenvname bioconductor-gaggle

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-gaggle/tags`_ for valid values for ``<tag>``)

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