bioconductor-gcrisprtools

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Set of tools for evaluating pooled high-throughput screening experiments, typically employing CRISPR/Cas9 or shRNA expression cassettes. Contains methods for interrogating library and cassette behavior within an experiment, identifying differentially abundant cassettes, aggregating signals to identify candidate targets for empirical validation, hypothesis testing, and comprehensive reporting.

Home http://bioconductor.org/packages/3.7/bioc/html/gCrisprTools.html
Versions 1.8.0, 1.6.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-gcrisprtools
Links biotools: gcrisprtools, doi: 10.1038/nmeth.3252

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gcrisprtools

and update with:

conda update bioconductor-gcrisprtools

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-gcrisprtools.