recipe bioconductor-gcrisprtools

Set of tools for evaluating pooled high-throughput screening experiments, typically employing CRISPR/Cas9 or shRNA expression cassettes. Contains methods for interrogating library and cassette behavior within an experiment, identifying differentially abundant cassettes, aggregating signals to identify candidate targets for empirical validation, hypothesis testing, and comprehensive reporting.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/gCrisprTools.html
License:Artistic-2.0
Recipe:/bioconductor-gcrisprtools/meta.yaml
Links:biotools: gcrisprtools, doi: 10.1038/nmeth.3252
package bioconductor-gcrisprtools

(downloads) docker_bioconductor-gcrisprtools

Versions:

1.10.0-0, 1.8.0-0, 1.6.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gcrisprtools

and update with:

conda update bioconductor-gcrisprtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gcrisprtools:<tag>

(see bioconductor-gcrisprtools/tags for valid values for <tag>)