recipe bioconductor-gcrma

Background Adjustment Using Sequence Information

Homepage

https://bioconductor.org/packages/3.11/bioc/html/gcrma.html

License

LGPL

Recipe

/bioconductor-gcrma/meta.yaml

Links

biotools: gcrma, doi: 10.1186/1471-2105-9-452

Background adjustment using sequence information

package bioconductor-gcrma

Versions

2.60.0-0,  2.58.0-0,  2.56.0-1,  2.54.0-0,  2.52.0-0,  2.50.0-0,  2.48.0-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-affyio >=1.58.0,<1.59.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-xvector >=0.28.0,<0.29.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

• r-biocmanager

Required By

• bioconductor-simpleaffy

• bioconductor-affyplm

• bioconductor-webbioc

• bioconductor-affycoretools

• bioconductor-bgx

• bioconductor-mapredictdsc

• bioconductor-maskbad

• bioconductor-affylmgui

• bioconductor-affyilm

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gcrma

and update with:

conda update bioconductor-gcrma

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gcrma:<tag>

(see bioconductor-gcrma/tags for valid values for <tag>)

Link to this page

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