recipe bioconductor-gcsscore

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Homepage

https://bioconductor.org/packages/3.14/bioc/html/GCSscore.html

License

GPL (>=3)

Recipe

/bioconductor-gcsscore/meta.yaml

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

package bioconductor-gcsscore

Versions

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-affxparser >=1.66.0,<1.67.0

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

• r-biocmanager

• r-data.table

• r-devtools

• r-dplr

• r-rsqlite

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gcsscore

and update with:

conda update bioconductor-gcsscore

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gcsscore:<tag>

(see bioconductor-gcsscore/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gcsscore/README.html)