Package Recipe 'bioconductor-gcsscore'

recipe bioconductor-gcsscore

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/GCSscore.html
License:: GPL (>=3)
Recipe:: /bioconductor-gcsscore/meta.yaml

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

package bioconductor-gcsscore¶

Versions:

1.12.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-1, 1.4.0-0, 1.2.0-0, 1.0.0-0

Depends:

bioconductor-affxparser >=1.70.0,<1.71.0
bioconductor-biobase >=2.58.0,<2.59.0
r-base >=4.2,<4.3.0a0
r-biocmanager
r-data.table
r-devtools
r-dplr
r-rsqlite
r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-gcsscore

and update with:

conda update bioconductor-gcsscore

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gcsscore:<tag>

(see bioconductor-gcsscore/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gcsscore/README.html)