recipe bioconductor-gcsscore

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GCSscore.html

License:

GPL (>=3)

Recipe:

/bioconductor-gcsscore/meta.yaml

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

package bioconductor-gcsscore

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-affxparser >=1.70.0,<1.71.0

• bioconductor-biobase >=2.58.0,<2.59.0

• r-base >=4.2,<4.3.0a0

• r-biocmanager

• r-data.table

• r-devtools

• r-dplr

• r-rsqlite

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-gcsscore

and update with:

conda update bioconductor-gcsscore

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gcsscore:<tag>

(see bioconductor-gcsscore/tags for valid values for <tag>)

Download stats

Link to this page

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