recipe bioconductor-gdrutils

A package with helper functions for processing drug response data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/gDRutils.html

License:

Artistic-2.0

Recipe:

/bioconductor-gdrutils/meta.yaml

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

package bioconductor-gdrutils

versions:

1.0.0-0

depends bioconductor-biocparallel:

>=1.36.0,<1.37.0

depends bioconductor-bumpymatrix:

>=1.10.0,<1.11.0

depends bioconductor-multiassayexperiment:

>=1.28.0,<1.29.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-base:

>=4.3,<4.4.0a0

depends r-checkmate:

depends r-data.table:

depends r-drc:

depends r-jsonlite:

depends r-jsonvalidate:

depends r-magrittr:

depends r-stringr:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-gdrutils

and update with::

   mamba update bioconductor-gdrutils

To create a new environment, run:

mamba create --name myenvname bioconductor-gdrutils

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-gdrutils:<tag>

(see `bioconductor-gdrutils/tags`_ for valid values for ``<tag>``)

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