recipe bioconductor-gdsarray

Representing GDS files as array-like objects

Homepage

https://bioconductor.org/packages/3.10/bioc/html/GDSArray.html

License

GPL-3

Recipe

/bioconductor-gdsarray/meta.yaml

GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed.

package bioconductor-gdsarray

Versions

1.6.0-0, 1.4.2-0, 1.2.0-1, 1.2.0-0

Depends

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-delayedarray >=0.12.0,<0.13.0

• bioconductor-gdsfmt >=1.22.0,<1.23.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-seqarray >=1.26.0,<1.27.0

• bioconductor-snprelate >=1.20.0,<1.21.0

• r-base >=3.6,<3.7.0a0

Required By

• bioconductor-cnvranger

• bioconductor-variantexperiment

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gdsarray

and update with:

conda update bioconductor-gdsarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gdsarray:<tag>

(see bioconductor-gdsarray/tags for valid values for <tag>)

Link to this page

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