recipe bioconductor-gdsarray

GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GDSArray.html

License

GPL-3

Recipe

/bioconductor-gdsarray/meta.yaml

package bioconductor-gdsarray

(downloads) docker_bioconductor-gdsarray

Versions

1.2.0-1, 1.2.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-gdsfmt

>=1.18.0,<1.19.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-seqarray

>=1.22.0,<1.23.0

Depends bioconductor-snprelate

>=1.16.0,<1.17.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gdsarray

and update with:

conda update bioconductor-gdsarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gdsarray:<tag>

(see bioconductor-gdsarray/tags for valid values for <tag>)