- recipe bioconductor-gdsarray
Representing GDS files as array-like objects
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/GDSArray.html
- License:
GPL-3
- Recipe:
GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed.
- package bioconductor-gdsarray¶
-
- Versions:
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.2-0
,1.2.0-1
,1.2.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-gdsfmt
>=1.30.0,<1.31.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-seqarray
>=1.34.0,<1.35.0
bioconductor-snprelate
>=1.28.0,<1.29.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-gdsarray
and update with:
conda update bioconductor-gdsarray
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-gdsarray:<tag>
(see bioconductor-gdsarray/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-gdsarray/README.html)