recipe bioconductor-genbankr

Parsing GenBank files into semantically useful objects

Homepage

https://bioconductor.org/packages/3.10/bioc/html/genbankr.html

License

Artistic-2.0

Recipe

/bioconductor-genbankr/meta.yaml

Links

biotools: genbankr, doi: 10.1038/nmeth.3252

Reads Genbank files.

package bioconductor-genbankr

Versions

1.14.0-0, 1.12.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rtracklayer >=1.46.0,<1.47.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-variantannotation >=1.32.0,<1.33.0

• r-base >=3.6,<3.7.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genbankr

and update with:

conda update bioconductor-genbankr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genbankr:<tag>

(see bioconductor-genbankr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genbankr/README.html)