recipe bioconductor-genbankr

Parsing GenBank files into semantically useful objects

Homepage

https://bioconductor.org/packages/3.14/bioc/html/genbankr.html

License

Artistic-2.0

Recipe

/bioconductor-genbankr/meta.yaml

Links

biotools: genbankr, doi: 10.1038/nmeth.3252

Reads Genbank files.

package bioconductor-genbankr

Versions

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0, 

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-variantannotation >=1.40.0,<1.41.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genbankr

and update with:

conda update bioconductor-genbankr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genbankr:<tag>

(see bioconductor-genbankr/tags for valid values for <tag>)

Download stats

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