recipe bioconductor-genbankr

Parsing GenBank files into semantically useful objects

Homepage

https://bioconductor.org/packages/3.11/bioc/html/genbankr.html

License

Artistic-2.0

Recipe

/bioconductor-genbankr/meta.yaml

Links

biotools: genbankr, doi: 10.1038/nmeth.3252

Reads Genbank files.

package bioconductor-genbankr

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-variantannotation >=1.34.0,<1.35.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genbankr

and update with:

conda update bioconductor-genbankr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genbankr:<tag>

(see bioconductor-genbankr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genbankr/README.html)