recipe bioconductor-genefilter

genefilter: methods for filtering genes from high-throughput experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/genefilter.html

License:

Artistic-2.0

Recipe:

/bioconductor-genefilter/meta.yaml

Links:

biotools: genefilter, doi: 10.1038/nmeth.3252

Some basic functions for filtering genes.

package bioconductor-genefilter

Versions:

1.80.0-1,  1.80.0-0,  1.76.0-2,  1.76.0-1,  1.76.0-0,  1.74.0-0,  1.72.1-0,  1.72.0-0,  1.70.0-0, 

1.80.0-1,  1.80.0-0,  1.76.0-2,  1.76.0-1,  1.76.0-0,  1.74.0-0,  1.72.1-0,  1.72.0-0,  1.70.0-0,  1.68.0-0,  1.66.0-1,  1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-0,  1.58.1-0,  1.56.0-0,  1.54.2-0,  1.52.1-0,  1.52.0-0,  1.51.0-0,  1.50.0-0

Depends:

• bioconductor-annotate >=1.76.0,<1.77.0

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• libgfortran-ng

• libgfortran5 >=12.2.0

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-survival

Required By:

• cmsip

• bioconductor-gsri

• bioconductor-rnainteractmapk

• bioconductor-dexseq

• bioconductor-cntools

• hamip

• r-metaboanalyst

• bioconductor-gispa

• bioconductor-pcaexplorer

• bioconductor-nbamseq

• bioconductor-methylcc

• bioconductor-enmix

• bioconductor-methylumi

• bioconductor-classifyr

• bioconductor-xde

• bioconductor-mogsa

• bioconductor-splicewiz

• bioconductor-peca

• bioconductor-protgear

• bioconductor-tilingarray

• bioconductor-category

• bioconductor-a4base

• bioconductor-metaseqr2

• bioconductor-deseq2

• bioconductor-zinbwave

• bioconductor-annmap

• bioconductor-ihwpaper

• bioconductor-spatialheatmap

• bioconductor-mlinterfaces

• bioconductor-arrayqualitymetrics

• bioconductor-flowsorted.blood.epic

• bioconductor-sispa

• bioconductor-phenotest

• bioconductor-genemeta

• bioconductor-sva

• r-orqa

• bioconductor-covrna

• bioconductor-ringo

• bioconductor-countsimqc

• bioconductor-cbaf

• bioconductor-nxtirfcore

• bioconductor-hiiragi2013

• bioconductor-minfi

• bioconductor-pwrewas

• bioconductor-cellhts2

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genefilter

and update with:

conda update bioconductor-genefilter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genefilter:<tag>

(see bioconductor-genefilter/tags for valid values for <tag>)

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