recipe bioconductor-genefu

Computation of Gene Expression-Based Signatures in Breast Cancer

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/genefu.html

License:

Artistic-2.0

Recipe:

/bioconductor-genefu/meta.yaml

Links:

biotools: genefu, doi: 10.1093/bioinformatics/btv693

This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.

package bioconductor-genefu

Versions:

2.30.0-0,  2.26.0-0,  2.24.2-0,  2.22.1-0,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0, 

2.30.0-0,  2.26.0-0,  2.24.2-0,  2.22.1-0,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-1,  2.14.0-0,  2.12.0-0,  2.10.0-0

Depends:

• bioconductor-aims >=1.30.0,<1.31.0

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-impute >=1.72.0,<1.73.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-survcomp >=1.48.0,<1.49.0

• r-amap

• r-base >=4.2,<4.3.0a0

• r-ic10

• r-mclust

Required By:

• bioconductor-pdatk

• bioconductor-consensusov

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genefu

and update with:

conda update bioconductor-genefu

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genefu:<tag>

(see bioconductor-genefu/tags for valid values for <tag>)

Download stats

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