recipe bioconductor-geneplotter

Functions for plotting genomic data

Homepage

https://bioconductor.org/packages/3.8/bioc/html/geneplotter.html

License

Artistic-2.0

Recipe

/bioconductor-geneplotter/meta.yaml

Links

biotools: geneplotter, doi: 10.1038/nmeth.3252

package bioconductor-geneplotter

Versions

1.60.0-0, 1.58.0-0, 1.56.0-0, 1.54.0-0, 1.50.0-0, 1.48.0-0, 1.46.0-0

Depends

• bioconductor-annotate >=1.60.0,<1.61.0

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• r-base >=3.5.1,<3.5.2.0a0

• r-lattice

• r-rcolorbrewer

Required By

• bioconductor-biocgraph

• bioconductor-rnainteract

• bioconductor-junctionseq

• bioconductor-methylseekr

• bioconductor-enmix

• bioconductor-dexseq

• bioconductor-gsva

• bioconductor-hiiragi2013

• bioconductor-deseq2

• bioconductor-rnaither

• xtail

• bioconductor-flowq

• bioconductor-isogenegui

• bioconductor-enrichmentbrowser

• bioconductor-deseq

• bioconductor-hd2013sgi

• bioconductor-hmmcopy

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-geneplotter

and update with:

conda update bioconductor-geneplotter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geneplotter:<tag>

(see bioconductor-geneplotter/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-geneplotter/README.html)