recipe bioconductor-generecommender

A gene recommender algorithm to identify genes coexpressed with a query set of genes

Homepage

https://bioconductor.org/packages/3.11/bioc/html/geneRecommender.html

License

GPL (>= 2)

Recipe

/bioconductor-generecommender/meta.yaml

Links

biotools: generecommender, doi: 10.1101/gr.1125403

This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.

package bioconductor-generecommender

Versions

1.60.0-0, 1.58.0-0, 1.56.0-1, 1.54.0-1, 1.54.0-0, 1.52.0-0, 1.50.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-generecommender

and update with:

conda update bioconductor-generecommender

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-generecommender:<tag>

(see bioconductor-generecommender/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-generecommender/README.html)