recipe bioconductor-geneticsped

Pedigree and genetic relationship functions



LGPL (>= 2.1) | file LICENSE



Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

package bioconductor-geneticsped

(downloads) docker_bioconductor-geneticsped



depends libblas:


depends libgcc-ng:


depends libgfortran-ng:

depends libgfortran5:


depends liblapack:


depends libstdcxx-ng:


depends r-base:


depends r-gdata:

depends r-genetics:

depends r-mass:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-geneticsped

and update with::

   mamba update bioconductor-geneticsped

To create a new environment, run:

mamba create --name myenvname bioconductor-geneticsped

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-geneticsped/tags`_ for valid values for ``<tag>``)

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