recipe bioconductor-geneticsped

Pedigree and genetic relationship functions

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/GeneticsPed.html

License:

LGPL (>= 2.1) | file LICENSE

Recipe:

/bioconductor-geneticsped/meta.yaml

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

package bioconductor-geneticsped

(downloads) docker_bioconductor-geneticsped

versions:
1.64.0-2,  1.64.0-1,  1.64.0-0,  1.62.1-0,  1.60.0-1,  1.60.0-0,  1.56.0-2,  1.56.0-1,  1.56.0-0, 

1.64.0-2,  1.64.0-1,  1.64.0-0,  1.62.1-0,  1.60.0-1,  1.60.0-0,  1.56.0-2,  1.56.0-1,  1.56.0-0,  1.54.0-0,  1.52.0-1,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-1,  1.46.0-0,  1.44.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends libgfortran-ng:

depends libgfortran5:

>=12.3.0

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-base:

>=4.3,<4.4.0a0

depends r-gdata:

depends r-genetics:

depends r-mass:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-geneticsped

and update with::

   mamba update bioconductor-geneticsped

To create a new environment, run:

mamba create --name myenvname bioconductor-geneticsped

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-geneticsped:<tag>

(see `bioconductor-geneticsped/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-geneticsped/README.html)