recipe bioconductor-genie3

GEne Network Inference with Ensemble of trees



GPL (>= 2)



This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

package bioconductor-genie3

(downloads) docker_bioconductor-genie3



depends libblas:


depends libgcc-ng:


depends liblapack:


depends r-base:


depends r-dplyr:

depends r-reshape2:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-genie3

and update with::

   mamba update bioconductor-genie3

To create a new environment, run:

mamba create --name myenvname bioconductor-genie3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-genie3/tags`_ for valid values for ``<tag>``)

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