recipe bioconductor-genomicfiles

Distributed computing by file or by range

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GenomicFiles.html

License:

Artistic-2.0

Recipe:

/bioconductor-genomicfiles/meta.yaml

Links:

biotools: genomicfiles, doi: 10.1038/nmeth.3252

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

package bioconductor-genomicfiles

Versions:

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-1, 

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-matrixgenerics >=1.10.0,<1.11.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-quasr

• orfquant

• bioconductor-erma

• bioconductor-cagefightr

• bioconductor-rqc

• bioconductor-vcfarray

• bioconductor-derfinder

• riboseqc

• bioconductor-contibait

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomicfiles

and update with:

conda update bioconductor-genomicfiles

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicfiles:<tag>

(see bioconductor-genomicfiles/tags for valid values for <tag>)

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