recipe bioconductor-genomicfiles

Distributed computing by file or by range

Homepage

https://bioconductor.org/packages/3.13/bioc/html/GenomicFiles.html

License

Artistic-2.0

Recipe

/bioconductor-genomicfiles/meta.yaml

Links

biotools: genomicfiles, doi: 10.1038/nmeth.3252

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

package bioconductor-genomicfiles

Versions

1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-1,  1.18.0-0,  1.16.0-0, 

1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biocparallel >=1.26.0,<1.27.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicalignments >=1.28.0,<1.29.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-matrixgenerics >=1.4.0,<1.5.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-rtracklayer >=1.52.0,<1.53.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• bioconductor-variantannotation >=1.38.0,<1.39.0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-ldblock

• riboseqc

• bioconductor-erma

• bioconductor-vcfarray

• orfquant

• bioconductor-contibait

• bioconductor-derfinder

• bioconductor-quasr

• bioconductor-rqc

• bioconductor-cagefightr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicfiles

and update with:

conda update bioconductor-genomicfiles

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicfiles:<tag>

(see bioconductor-genomicfiles/tags for valid values for <tag>)

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