recipe bioconductor-genomicfiles

This package provides infrastructure for parallel computations distributed ‘by file’ or ‘by range’. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GenomicFiles.html

License

Artistic-2.0

Recipe

/bioconductor-genomicfiles/meta.yaml

Links

biotools: genomicfiles, doi: 10.1038/nmeth.3252

package bioconductor-genomicfiles

Versions

1.20.0-1, 1.18.0-1, 1.18.0-0, 1.16.0-0, 1.14.0-0

Depends

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• bioconductor-biocparallel >=1.18.0,<1.19.0

• bioconductor-genomeinfodb >=1.20.0,<1.21.0

• bioconductor-genomicalignments >=1.20.0,<1.21.0

• bioconductor-genomicranges >=1.36.0,<1.37.0

• bioconductor-iranges >=2.18.0,<2.19.0

• bioconductor-rsamtools >=2.0.0,<2.1.0

• bioconductor-rtracklayer >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• bioconductor-summarizedexperiment >=1.14.0,<1.15.0

• bioconductor-variantannotation >=1.30.0,<1.31.0

• r-base >=3.6,<3.7.0a0

Required By

• bioconductor-cagefightr

• bioconductor-ldblock

• bioconductor-gqtlbase

• bioconductor-erma

• bioconductor-rqc

• bioconductor-derfinder

• bioconductor-gqtlstats

• bioconductor-yrimulti

• bioconductor-vcfarray

• bioconductor-contibait

• bioconductor-quasr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicfiles

and update with:

conda update bioconductor-genomicfiles

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicfiles:<tag>

(see bioconductor-genomicfiles/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genomicfiles/README.html)