recipe bioconductor-genomicfiles

This package provides infrastructure for parallel computations distributed ‘by file’ or ‘by range’. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/GenomicFiles.html License:Artistic-2.0 Recipe:/bioconductor-genomicfiles/meta.yaml Links:biotools: genomicfiles, doi: 10.1038/nmeth.3252

package bioconductor-genomicfiles

Versions:

1.18.0-1, 1.18.0-0, 1.16.0-0, 1.14.0-0

Depends:

• bioconductor-biocgenerics >=0.28.0,<0.29.0
• bioconductor-biocparallel >=1.16.0,<1.17.0
• bioconductor-genomeinfodb >=1.18.0,<1.19.0
• bioconductor-genomicalignments >=1.18.0,<1.19.0
• bioconductor-genomicranges >=1.34.0,<1.35.0
• bioconductor-iranges >=2.16.0,<2.17.0
• bioconductor-rsamtools >=1.34.0,<1.35.0
• bioconductor-rtracklayer >=1.42.0,<1.43.0
• bioconductor-s4vectors >=0.20.0,<0.21.0
• bioconductor-summarizedexperiment >=1.12.0,<1.13.0
• bioconductor-variantannotation >=1.28.0,<1.29.0
• r-base >=3.5.1,<3.5.2.0a0

Required By:

• bioconductor-derfinder
• bioconductor-rqc
• bioconductor-gqtlstats
• bioconductor-yrimulti
• bioconductor-erma
• bioconductor-contibait
• bioconductor-gqtlbase
• bioconductor-cagefightr
• bioconductor-ldblock
• bioconductor-quasr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicfiles

and update with:

conda update bioconductor-genomicfiles

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicfiles:<tag>

(see bioconductor-genomicfiles/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genomicfiles/README.html)