- recipe bioconductor-genomicfiles
Distributed computing by file or by range
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GenomicFiles.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: genomicfiles, doi: 10.1038/nmeth.3252
This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
- package bioconductor-genomicfiles¶
-
- Versions:
1.34.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.0-1
,1.34.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-matrixgenerics
>=1.10.0,<1.11.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genomicfiles
and update with:
conda update bioconductor-genomicfiles
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicfiles:<tag>
(see bioconductor-genomicfiles/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicfiles/README.html)