recipe bioconductor-genomicinstability

Genomic Instability estimation for scRNA-Seq

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/genomicInstability.html

License:

file LICENSE

Recipe:

/bioconductor-genomicinstability/meta.yaml

This package contain functions to run genomic instability analysis (GIA) from scRNA-Seq data. GIA estimates the association between gene expression and genomic location of the coding genes. It uses the aREA algorithm to quantify the enrichment of sets of contiguous genes (loci-blocks) on the gene expression profiles and estimates the Genomic Instability Score (GIS) for each analyzed cell.

package bioconductor-genomicinstability

(downloads) docker_bioconductor-genomicinstability

Versions:

1.4.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomicinstability

and update with:

conda update bioconductor-genomicinstability

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicinstability:<tag>

(see bioconductor-genomicinstability/tags for valid values for <tag>)

Download stats