Package Recipe 'bioconductor-genomicranges'

recipe bioconductor-genomicranges

Representation and manipulation of genomic intervals

Homepage: https://bioconductor.org/packages/3.12/bioc/html/GenomicRanges.html
License: Artistic-2.0
Recipe: /bioconductor-genomicranges/meta.yaml
Links: biotools: genomicranges

The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.

package bioconductor-genomicranges¶

Versions

1.42.0-0, 1.40.0-0, 1.38.0-0, 1.36.0-1, 1.34.0-0, 1.32.7-0, 1.30.3-0, 1.30.0-0, 1.28.6-0,

1.42.0-0, 1.40.0-0, 1.38.0-0, 1.36.0-1, 1.34.0-0, 1.32.7-0, 1.30.3-0, 1.30.0-0, 1.28.6-0, 1.26.4-0, 1.26.1-1, 1.24.3-1, 1.22.4-0, 1.22.3-0, 1.22.2-0, 1.22.1-0, 1.22.0-0, 1.20.8-0

Depends

bioconductor-biocgenerics >=0.36.0,<0.37.0
bioconductor-genomeinfodb >=1.26.0,<1.27.0
bioconductor-iranges >=2.24.0,<2.25.0
bioconductor-s4vectors >=0.28.0,<0.29.0
bioconductor-xvector >=0.30.0,<0.31.0
libblas >=3.8.0,<4.0a0
libgcc-ng >=7.5.0
liblapack >=3.8.0,<3.9.0a0
r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicranges

and update with:

conda update bioconductor-genomicranges

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicranges:<tag>

(see bioconductor-genomicranges/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-genomicranges/README.html)