bioconductor-genomicranges

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The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages respectively. Both packages build on top of the GenomicRanges infrastructure.

Home http://bioconductor.org/packages/3.6/bioc/html/GenomicRanges.html
Versions 1.20.8, 1.22.0, 1.22.1, 1.22.2, 1.22.3, 1.22.4, 1.24.3, 1.26.1, 1.26.4, 1.28.6, 1.30.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-genomicranges

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicranges

and update with:

conda update bioconductor-genomicranges

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-genomicranges.