-
recipe
bioconductor-genomicranges¶ Representation and manipulation of genomic intervals
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/GenomicRanges.html
- License
Artistic-2.0
- Recipe
- Links
biotools: genomicranges
The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.
-
package
bioconductor-genomicranges¶ 
- Versions
1.38.0-0, 1.36.0-1, 1.34.0-0, 1.32.7-0, 1.30.3-0, 1.30.0-0, 1.28.6-0, 1.26.4-0, 1.26.1-1, 1.24.3-1, 1.22.4-0, 1.22.3-0, 1.22.2-0, 1.22.1-0, 1.22.0-0, 1.20.8-0
- Depends
bioconductor-biocgenerics >=0.32.0,<0.33.0
bioconductor-genomeinfodb >=1.22.0,<1.23.0
bioconductor-iranges >=2.20.0,<2.21.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-xvector >=0.26.0,<0.27.0
libgcc-ng >=7.3.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-genomicranges
and update with:
conda update bioconductor-genomicranges
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicranges:<tag>
(see bioconductor-genomicranges/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicranges/README.html)