recipe bioconductor-genomicranges

Representation and manipulation of genomic intervals

Homepage

https://bioconductor.org/packages/3.11/bioc/html/GenomicRanges.html

License

Artistic-2.0

Recipe

/bioconductor-genomicranges/meta.yaml

Links

biotools: genomicranges

The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.

package bioconductor-genomicranges

(downloads) docker_bioconductor-genomicranges

Versions
1.40.0-01.38.0-01.36.0-11.34.0-01.32.7-01.30.3-01.30.0-01.28.6-01.26.4-0

1.40.0-01.38.0-01.36.0-11.34.0-01.32.7-01.30.3-01.30.0-01.28.6-01.26.4-01.26.1-11.24.3-11.22.4-01.22.3-01.22.2-01.22.1-01.22.0-01.20.8-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicranges

and update with:

conda update bioconductor-genomicranges

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicranges:<tag>

(see bioconductor-genomicranges/tags for valid values for <tag>)