recipe bioconductor-genomicranges

The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GenomicRanges.html

License

Artistic-2.0

Recipe

/bioconductor-genomicranges/meta.yaml

Links

biotools: genomicranges

package bioconductor-genomicranges

(downloads) docker_bioconductor-genomicranges

Versions

1.36.0-1, 1.34.0-0, 1.32.7-0, 1.30.3-0, 1.30.0-0, 1.28.6-0, 1.26.4-0, 1.26.1-1, 1.24.3-1, 1.22.4-0, 1.22.3-0, 1.22.2-0, 1.22.1-0, 1.22.0-0, 1.20.8-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genomicranges

and update with:

conda update bioconductor-genomicranges

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicranges:<tag>

(see bioconductor-genomicranges/tags for valid values for <tag>)