-
recipe
bioconductor-genomicranges¶ The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/GenomicRanges.html
- License
Artistic-2.0
- Recipe
- Links
biotools: genomicranges
-
package
bioconductor-genomicranges¶ 
- Versions
1.34.0-0, 1.32.7-0, 1.30.3-0, 1.30.0-0, 1.28.6-0, 1.26.4-0, 1.26.1-1, 1.24.3-1, 1.22.4-0, 1.22.3-0, 1.22.2-0, 1.22.1-0, 1.22.0-0, 1.20.8-0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-genomeinfodb
>=1.18.0,<1.19.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-xvector
>=0.22.0,<0.23.0
- Depends libgcc-ng
>=7.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-genomicranges
and update with:
conda update bioconductor-genomicranges
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicranges:<tag>
(see bioconductor-genomicranges/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicranges/README.html)