- recipe bioconductor-genomicranges
Representation and manipulation of genomic intervals
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/GenomicRanges.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: genomicranges
The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages, respectively. Both packages build on top of the GenomicRanges infrastructure.
- package bioconductor-genomicranges¶
-
- Versions:
1.50.0-1
,1.50.0-0
,1.46.1-1
,1.46.1-0
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.50.0-1
,1.50.0-0
,1.46.1-1
,1.46.1-0
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.34.0-0
,1.32.7-0
,1.30.3-0
,1.30.0-0
,1.28.6-0
,1.26.4-0
,1.26.1-1
,1.24.3-1
,1.22.4-0
,1.22.3-0
,1.22.2-0
,1.22.1-0
,1.22.0-0
,1.20.8-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-xvector
>=0.38.0,<0.39.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-genomicranges
and update with:
conda update bioconductor-genomicranges
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-genomicranges:<tag>
(see bioconductor-genomicranges/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-genomicranges/README.html)