recipe bioconductor-genomicscores

Infrastructure to work with genomewide position-specific scores

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GenomicScores.html

License:

Artistic-2.0

Recipe:

/bioconductor-genomicscores/meta.yaml

Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.

package bioconductor-genomicscores

Versions:

2.10.0-0,  2.6.0-0,  2.4.0-0,  2.2.0-1,  2.2.0-0,  2.0.0-0,  1.10.0-0,  1.8.1-0,  1.6.0-0, 

2.10.0-0,  2.6.0-0,  2.4.0-0,  2.2.0-1,  2.2.0-0,  2.0.0-0,  1.10.0-0,  1.8.1-0,  1.6.0-0,  1.4.1-0,  1.2.0-0,  1.0.2-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-biocmanager

• r-httr

• r-xml

Required By:

• bioconductor-mafdb.gnomadex.r2.1.grch38

• bioconductor-mafh5.gnomad.v3.1.1.grch38

• drop

• bioconductor-primirtss

• bioconductor-mafdb.gnomad.r2.1.grch38

• bioconductor-variantfiltering

• bioconductor-mafh5.gnomad.v3.1.2.grch38

• bioconductor-mafdb.1kgenomes.phase1.hs37d5

• bioconductor-appreci8r

• bioconductor-phylop35way.ucsc.mm39

• bioconductor-phastcons30way.ucsc.hg38

• bioconductor-mafdb.exac.r1.0.nontcga.grch38

• bioconductor-phastcons100way.ucsc.hg38

• bioconductor-mafdb.exac.r1.0.nontcga.hs37d5

• bioconductor-mafdb.1kgenomes.phase1.grch38

• bioconductor-mafdb.1kgenomes.phase3.grch38

• r-tmae

• bioconductor-phastcons100way.ucsc.hg19

• bioconductor-rarevariantvis

• bioconductor-mafdb.1kgenomes.phase3.hs37d5

• bioconductor-atacseqqc

• bioconductor-phastcons7way.ucsc.hg38

• bioconductor-mafdb.topmed.freeze5.hg38

• bioconductor-fitcons.ucsc.hg19

• bioconductor-mafdb.exac.r1.0.hs37d5

• bioconductor-phastcons35way.ucsc.mm39

• bioconductor-mafdb.topmed.freeze5.hg19

• bioconductor-mafdb.gnomad.r2.1.hs37d5

• bioconductor-mafdb.exac.r1.0.grch38

• bioconductor-mafdb.gnomadex.r2.1.hs37d5

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomicscores

and update with:

conda update bioconductor-genomicscores

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicscores:<tag>

(see bioconductor-genomicscores/tags for valid values for <tag>)

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