recipe bioconductor-genomictuples

Representation and Manipulation of Genomic Tuples

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GenomicTuples.html

License:

Artistic-2.0

Recipe:

/bioconductor-genomictuples/meta.yaml

Links:

biotools: genomictuples, doi: 10.21105/joss.00020

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

package bioconductor-genomictuples

Versions:

1.32.0-1,  1.32.0-0,  1.28.0-2,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0, 

1.32.0-1,  1.32.0-0,  1.28.0-2,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.14.1-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-rcpp >=0.11.2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomictuples

and update with:

conda update bioconductor-genomictuples

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomictuples:<tag>

(see bioconductor-genomictuples/tags for valid values for <tag>)

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