recipe bioconductor-geodiff

Count model based differential expression and normalization on GeoMx RNA data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GeoDiff.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-geodiff/meta.yaml

A series of statistical models using count generating distributions for background modelling, feature and sample QC, normalization and differential expression analysis on GeoMx RNA data. The application of these methods are demonstrated by example data analysis vignette.

package bioconductor-geodiff

(downloads) docker_bioconductor-geodiff

Versions:

1.4.0-01.0.0-21.0.0-11.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-geodiff

and update with:

conda update bioconductor-geodiff

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geodiff:<tag>

(see bioconductor-geodiff/tags for valid values for <tag>)

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