recipe bioconductor-geoexplorer

GEOexplorer: an R/Bioconductor package for gene expression analysis and visualisation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GEOexplorer.html

License:

GPL-3

Recipe:

/bioconductor-geoexplorer/meta.yaml

GEOexplorer is a Shiny app that enables exploratory data analysis and differential gene expression of gene expression analysis on microarray gene expression datasets held on the GEO database. The outputs are interactive graphs that enable users to explore the results of the analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

package bioconductor-geoexplorer

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-geoquery >=2.66.0,<2.67.0

• bioconductor-impute >=1.72.0,<1.73.0

• bioconductor-limma >=3.54.0,<3.55.0

• r-base >=4.2,<4.3.0a0

• r-dt

• r-factoextra

• r-ggplot2

• r-heatmaply

• r-htmltools

• r-maptools

• r-pheatmap

• r-plotly

• r-scales

• r-shiny

• r-shinybs

• r-shinybusy

• r-shinyheatmaply

• r-stringr

• r-umap

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-geoexplorer

and update with:

conda update bioconductor-geoexplorer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-geoexplorer:<tag>

(see bioconductor-geoexplorer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-geoexplorer/README.html)