- recipe bioconductor-gep2pep
Creation and Analysis of Pathway Expression Profiles (PEPs)
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/gep2pep.html
- License
GPL-3
- Recipe
Pathway Expression Profiles (PEPs) are based on the expression of pathways (defined as sets of genes) as opposed to individual genes. This package converts gene expression profiles to PEPs and performs enrichment analysis of both pathways and experimental conditions, such as "drug set enrichment analysis" and "gene2drug" drug discovery analysis respectively.
- package bioconductor-gep2pep¶
-
- Versions
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-gseabase
>=1.56.0,<1.57.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
r-base
>=4.1,<4.2.0a0
r-repo
>=2.1.1
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-gep2pep
and update with:
conda update bioconductor-gep2pep
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-gep2pep:<tag>
(see bioconductor-gep2pep/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-gep2pep/README.html)