recipe bioconductor-getdee2

Programmatic access to the DEE2 RNA expression dataset

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/getDEE2.html

License:

GPL-3

Recipe:

/bioconductor-getdee2/meta.yaml

Digital Expression Explorer 2 (or DEE2 for short) is a repository of processed RNA-seq data in the form of counts. It was designed so that researchers could undertake re-analysis and meta-analysis of published RNA-seq studies quickly and easily. As of April 2020, over 1 million SRA datasets have been processed. This package provides an R interface to access these expression data. More information about the DEE2 project can be found at the project homepage (http://dee2.io) and main publication (https://doi.org/10.1093/gigascience/giz022).

package bioconductor-getdee2

(downloads) docker_bioconductor-getdee2

Versions:

1.7.0-01.4.0-01.2.0-01.0.0-11.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-getdee2

and update with:

conda update bioconductor-getdee2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-getdee2:<tag>

(see bioconductor-getdee2/tags for valid values for <tag>)

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