recipe bioconductor-ggtreedendro

Drawing 'dendrogram' using 'ggtree'

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ggtreeDendro.html

License:

Artistic-2.0

Recipe:

/bioconductor-ggtreedendro/meta.yaml

Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.

package bioconductor-ggtreedendro

versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-ggtree:

>=3.14.0,<3.15.0

depends r-base:

>=4.4,<4.5.0a0

depends r-ggplot2:

depends r-tidytree:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ggtreedendro

and update with::

   mamba update bioconductor-ggtreedendro

To create a new environment, run:

mamba create --name myenvname bioconductor-ggtreedendro

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ggtreedendro:<tag>

(see `bioconductor-ggtreedendro/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ggtreedendro/README.html)