recipe bioconductor-ggtreeextra

An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ggtreeExtra.html

License:

GPL (>= 3)

Recipe:

/bioconductor-ggtreeextra/meta.yaml

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

package bioconductor-ggtreeextra

(downloads) docker_bioconductor-ggtreeextra

versions:

1.12.0-0,  1.10.0-0,  1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.2-0,  1.0.0-0

depends bioconductor-ggtree:

>=3.10.0,<3.11.0

depends r-base:

>=4.3,<4.4.0a0

depends r-cli:

depends r-ggnewscale:

depends r-ggplot2:

depends r-magrittr:

depends r-rlang:

depends r-tidytree:

>=0.3.9

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ggtreeextra

and update with::

   mamba update bioconductor-ggtreeextra

To create a new environment, run:

mamba create --name myenvname bioconductor-ggtreeextra

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ggtreeextra:<tag>

(see `bioconductor-ggtreeextra/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ggtreeextra/README.html)