recipe bioconductor-glad

Gain and Loss Analysis of DNA

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/GLAD.html

License:

GPL-2

Recipe:

/bioconductor-glad/meta.yaml

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

package bioconductor-glad

Versions:

2.62.0-0,  2.58.0-3,  2.58.0-2,  2.58.0-1,  2.58.0-0,  2.56.0-0,  2.54.0-1,  2.54.0-0,  2.52.0-0, 

2.62.0-0,  2.58.0-3,  2.58.0-2,  2.58.0-1,  2.58.0-0,  2.56.0-0,  2.54.0-1,  2.54.0-0,  2.52.0-0,  2.50.0-0,  2.48.0-1,  2.48.0-0

Depends:

• gsl >=2.7,<2.8.0a0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-aws

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-adacgh2

• bioconductor-snapcgh

• bioconductor-seqcna

• bioconductor-manor

• bioconductor-italics

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-glad

and update with:

conda update bioconductor-glad

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-glad:<tag>

(see bioconductor-glad/tags for valid values for <tag>)

Download stats

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