recipe bioconductor-glad

Gain and Loss Analysis of DNA

Homepage

https://bioconductor.org/packages/3.12/bioc/html/GLAD.html

License

GPL-2

Recipe

/bioconductor-glad/meta.yaml

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

package bioconductor-glad

Versions

2.54.0-0,  2.52.0-0,  2.50.0-0,  2.48.0-1,  2.48.0-0

Depends

• gsl >=2.6,<2.7.0a0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=7.5.0

• r-aws

• r-base >=4.0,<4.1.0a0

Required By

• bioconductor-manor

• bioconductor-adacgh2

• bioconductor-snapcgh

• bioconductor-seqcna

• bioconductor-italics

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-glad

and update with:

conda update bioconductor-glad

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-glad:<tag>

(see bioconductor-glad/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-glad/README.html)