recipe bioconductor-glad

Gain and Loss Analysis of DNA

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/GLAD.html

License:

GPL-2

Recipe:

/bioconductor-glad/meta.yaml

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

package bioconductor-glad

(downloads) docker_bioconductor-glad

versions:
2.66.0-0,  2.64.0-0,  2.62.0-2,  2.62.0-1,  2.62.0-0,  2.58.0-3,  2.58.0-2,  2.58.0-1,  2.58.0-0, 

2.66.0-0,  2.64.0-0,  2.62.0-2,  2.62.0-1,  2.62.0-0,  2.58.0-3,  2.58.0-2,  2.58.0-1,  2.58.0-0,  2.56.0-0,  2.54.0-1,  2.54.0-0,  2.52.0-0,  2.50.0-0,  2.48.0-1,  2.48.0-0

depends gsl:

>=2.7,<2.8.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-aws:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-glad

and update with::

   mamba update bioconductor-glad

To create a new environment, run:

mamba create --name myenvname bioconductor-glad

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-glad:<tag>

(see `bioconductor-glad/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-glad/README.html)